IL_8QYX_017
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8QYX|1|A2|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_017 not in the Motif Atlas
- Geometric match to IL_8VTW_072
- Geometric discrepancy: 0.2536
- The information below is about IL_8VTW_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8QYX|1|A2|C|339
8QYX|1|A2|C|340
8QYX|1|A2|G|341
8QYX|1|A2|G|342
*
8QYX|1|C2|C|32
8QYX|1|C2|G|33
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
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