IL_8QYX_018

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8QYX|1|A2|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_018 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1422

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8QYX|1|A2|G|348
8QYX|1|A2|A|349
8QYX|1|A2|C|350
*
8QYX|1|C2|G|25
8QYX|1|C2|C|26

Current chains

Chain A2

28S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S1

60S ribosomal protein L26