3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GAAC*GAGUUCAAGAGGGC
Length
18 nucleotides
Bulged bases
8QYX|1|A2|G|409, 8QYX|1|A2|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_019 not in the Motif Atlas
Geometric match to IL_5TBW_014
Geometric discrepancy: 0.1266
The information below is about IL_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.7
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

8QYX|1|A2|G|387
8QYX|1|A2|A|388
8QYX|1|A2|A|389
8QYX|1|A2|C|390
*
8QYX|1|A2|G|401
8QYX|1|A2|A|402
8QYX|1|A2|G|403
8QYX|1|A2|U|404
8QYX|1|A2|U|405
8QYX|1|A2|C|406
8QYX|1|A2|A|407
8QYX|1|A2|A|408
8QYX|1|A2|G|409
8QYX|1|A2|A|410
8QYX|1|A2|G|411
8QYX|1|A2|G|412
8QYX|1|A2|G|413
8QYX|1|A2|C|414

Current chains

Chain A2
28S rRNA

Nearby chains

Chain C2
5.8S ribosomal RNA; 5.8S rRNA
Chain J1
60S ribosomal protein L17
Chain S1
60S ribosomal protein L26
Chain f1
60S ribosomal protein L39

Coloring options:


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