IL_8QYX_022

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

8QYX|1|A2|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_022 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3986

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8QYX|1|A2|G|448
8QYX|1|A2|C|449
8QYX|1|A2|G|450
*
8QYX|1|A2|U|1297
8QYX|1|A2|C|1298

Current chains

Chain A2

28S rRNA

Nearby chains

Chain Y1

60S ribosomal protein L32

Chain Z1

60S ribosomal protein L35a