IL_8QYX_026

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8QYX|1|A2|G|483, 8QYX|1|A2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_026 not in the Motif Atlas

Geometric match to IL_8C3A_400

Geometric discrepancy: 0.1487

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8QYX|1|A2|G|482
8QYX|1|A2|G|483
8QYX|1|A2|U|484
8QYX|1|A2|C|485
*
8QYX|1|A2|G|671
8QYX|1|A2|C|672

Current chains

Chain A2

28S rRNA

Nearby chains

Chain k1

60S ribosomal protein L28