3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
8QYX|1|A2|A|509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_031 not in the Motif Atlas
Geometric match to IL_6WPI_001
Geometric discrepancy: 0.2514
The information below is about IL_6WPI_001
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
134

Unit IDs

8QYX|1|A2|G|508
8QYX|1|A2|A|509
8QYX|1|A2|U|510
*
8QYX|1|A2|A|649
8QYX|1|A2|C|650

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F1
60S ribosomal protein L13
Chain U1
Large ribosomal subunit protein uL15

Coloring options:


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