3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CG*CGG
Length
5 nucleotides
Bulged bases
8QYX|1|A2|G|1287
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_032 not in the Motif Atlas
Geometric match to IL_4LFB_036
Geometric discrepancy: 0.239
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_28408.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
60

Unit IDs

8QYX|1|A2|C|709
8QYX|1|A2|G|710
*
8QYX|1|A2|C|1286
8QYX|1|A2|G|1287
8QYX|1|A2|G|1288

Current chains

Chain A2
28S rRNA

Nearby chains

Chain H2
60S ribosomal protein L6
Chain Z1
60S ribosomal protein L35a

Coloring options:


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