IL_8QYX_042

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

8QYX|1|A2|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_042 not in the Motif Atlas

Geometric match to IL_8C3A_048

Geometric discrepancy: 0.1955

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8QYX|1|A2|G|1244
8QYX|1|A2|C|1245
*
8QYX|1|A2|G|1265
8QYX|1|A2|G|1266
8QYX|1|A2|C|1267

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain V1

60S ribosomal protein L29