IL_8QYX_045

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8QYX|1|A2|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_045 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1616

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8QYX|1|A2|G|1360
8QYX|1|A2|G|1361
*
8QYX|1|A2|C|1376
8QYX|1|A2|G|1377
8QYX|1|A2|C|1378
8QYX|1|A2|C|1379

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain F2

60S ribosomal protein L4

Chain H1

60S ribosomal protein L15