3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GG*CGCC
Length
6 nucleotides
Bulged bases
8QYX|1|A2|C|1378
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_045 not in the Motif Atlas
Geometric match to IL_1R3E_002
Geometric discrepancy: 0.1616
The information below is about IL_1R3E_002
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_44609.1
Basepair signature
cWW-cWW
Number of instances in this motif group
28

Unit IDs

8QYX|1|A2|G|1360
8QYX|1|A2|G|1361
*
8QYX|1|A2|C|1376
8QYX|1|A2|G|1377
8QYX|1|A2|C|1378
8QYX|1|A2|C|1379

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F1
60S ribosomal protein L13
Chain F2
60S ribosomal protein L4
Chain H1
60S ribosomal protein L15

Coloring options:


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