IL_8QYX_047

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_047 not in the Motif Atlas

Geometric match to IL_6WZR_001

Geometric discrepancy: 0.1365

The information below is about IL_6WZR_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

8QYX|1|A2|C|1431
8QYX|1|A2|G|1432
8QYX|1|A2|A|1433
8QYX|1|A2|G|1434
*
8QYX|1|A2|C|1450
8QYX|1|A2|G|1451
8QYX|1|A2|A|1452
8QYX|1|A2|G|1453

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K1

60S ribosomal protein L18