IL_8QYX_069

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

U(PSU)U*(A2M)GA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_069 not in the Motif Atlas

Homologous match to IL_8P9A_275

Geometric discrepancy: 0.071

The information below is about IL_8P9A_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|U|1861
8QYX|1|A2|PSU|1862
8QYX|1|A2|U|1863
*
8QYX|1|A2|A2M|1871
8QYX|1|A2|G|1872
8QYX|1|A2|A|1873

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Ribosomal protein uL16-like

Chain V1

60S ribosomal protein L29