IL_8QYX_078

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8QYX|1|A2|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_078 not in the Motif Atlas

Homologous match to IL_8GLP_083

Geometric discrepancy: 0.2443

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8QYX|1|A2|C|2083
8QYX|1|A2|C|2084
8QYX|1|A2|G|2085
*
8QYX|1|A2|C|2272
8QYX|1|A2|G|2273

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

60S ribosomal protein L4

Chain K1

60S ribosomal protein L18

Chain Y1

60S ribosomal protein L32