IL_8QYX_079
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 8QYX|1|A2|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_079 not in the Motif Atlas
- Homologous match to IL_8P9A_285
- Geometric discrepancy: 0.049
- The information below is about IL_8P9A_285
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
8QYX|1|A2|C|2290
8QYX|1|A2|G|2291
8QYX|1|A2|C|2292
*
8QYX|1|A2|G|2342
8QYX|1|A2|G|2343
8QYX|1|A2|U|2344
8QYX|1|A2|G|2345
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F2
- 60S ribosomal protein L4
- Chain U1
- Large ribosomal subunit protein uL15
- Chain Y1
- 60S ribosomal protein L32
- Chain k1
- 60S ribosomal protein L28
Coloring options: