IL_8QYX_082

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8QYX|1|A2|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_082 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.4774

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8QYX|1|A2|U|2312
8QYX|1|A2|A|2313
8QYX|1|A2|G|2314
*
8QYX|1|A2|C|2325
8QYX|1|A2|G|2326

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain Y1

60S ribosomal protein L32

Chain k1

60S ribosomal protein L28