IL_8QYX_084

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_084 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1012

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8QYX|1|A2|G|2406
8QYX|1|A2|G|2407
8QYX|1|A2|U|2408
8QYX|1|A2|U|2409
*
8QYX|1|A2|A|2783
8QYX|1|A2|C|2784

Current chains

Chain A2

28S rRNA

Nearby chains

Chain R1

60S ribosomal protein L23a

Chain a1

60S ribosomal protein L34

Chain d1

60S ribosomal protein L37

Chain f1

60S ribosomal protein L39