IL_8QYX_090

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_090 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2016

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8QYX|1|A2|C|2589
8QYX|1|A2|G|2590
8QYX|1|A2|A|2591
8QYX|1|A2|U|2592
8QYX|1|A2|C|2593
*
8QYX|1|A2|G|2752
8QYX|1|A2|G|2753
8QYX|1|A2|G|2754
8QYX|1|A2|A|2755
8QYX|1|A2|G|2756

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain T1

60S ribosomal protein L27

Chain a1

60S ribosomal protein L34