IL_8QYX_092

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_092 not in the Motif Atlas

Homologous match to IL_8C3A_076

Geometric discrepancy: 0.0654

The information below is about IL_8C3A_076

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8QYX|1|A2|C|2614
8QYX|1|A2|C|2615
*
8QYX|1|A2|G|2722
8QYX|1|A2|U|2723
8QYX|1|A2|G|2724

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L19

Chain a1

60S ribosomal protein L34