3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CAG*CGUG
Length
7 nucleotides
Bulged bases
8QYX|1|A2|U|2687
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_093 not in the Motif Atlas
Geometric match to IL_4V9F_076
Geometric discrepancy: 0.0888
The information below is about IL_4V9F_076
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_87316.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
12

Unit IDs

8QYX|1|A2|C|2646
8QYX|1|A2|A|2647
8QYX|1|A2|G|2648
*
8QYX|1|A2|C|2685
8QYX|1|A2|G|2686
8QYX|1|A2|U|2687
8QYX|1|A2|G|2688

Current chains

Chain A2
28S rRNA

Nearby chains

Chain a1
60S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1858 s