IL_8QYX_100

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8QYX|1|A2|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_100 not in the Motif Atlas

Homologous match to IL_8P9A_306

Geometric discrepancy: 0.0575

The information below is about IL_8P9A_306

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|A|2850
8QYX|1|A2|G|2851
8QYX|1|A2|U|2852
8QYX|1|A2|C|2853
8QYX|1|A2|G|2854
8QYX|1|A2|G|2855
*
8QYX|1|A2|C|3837
8QYX|1|A2|U|3838
8QYX|1|A2|G|3839
8QYX|1|A2|U|3840

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain P1

60S ribosomal protein L23