IL_8QYX_107
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8QYX|1|A2|A|3663, 8QYX|1|A2|U|3679, 8QYX|1|A2|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_107 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.1075
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QYX|1|A2|C|3660
8QYX|1|A2|G|3661
8QYX|1|A2|A|3662
8QYX|1|A2|A|3663
8QYX|1|A2|G|3664
8QYX|1|A2|G|3665
*
8QYX|1|A2|U|3677
8QYX|1|A2|G|3678
8QYX|1|A2|U|3679
8QYX|1|A2|U|3680
8QYX|1|A2|G|3681
8QYX|1|A2|A|3682
8QYX|1|A2|C|3683
8QYX|1|A2|G|3684
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- Large ribosomal subunit protein uL2
- Chain j1
- 60S ribosomal protein L37a
Coloring options: