IL_8QYX_108

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

8QYX|1|A2|OMC|3701

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_108 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.0834

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|C|3700
8QYX|1|A2|OMC|3701
8QYX|1|A2|A|3702
8QYX|1|A2|G|3703
*
8QYX|1|A2|C|3749
8QYX|1|A2|G|3750

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2