IL_8QYX_119

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AAG*UUUU

Length

7 nucleotides

Bulged bases

8QYX|1|A2|U|4069

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_119 not in the Motif Atlas

Geometric match to IL_3D0M_001

Geometric discrepancy: 0.118

The information below is about IL_3D0M_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8QYX|1|A2|A|3942
8QYX|1|A2|A|3943
8QYX|1|A2|G|3944
*
8QYX|1|A2|U|4068
8QYX|1|A2|U|4069
8QYX|1|A2|U|4070
8QYX|1|A2|U|4071

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a