IL_8QYX_131

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8QYX|1|A2|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_131 not in the Motif Atlas

Homologous match to IL_8P9A_332

Geometric discrepancy: 0.1211

The information below is about IL_8P9A_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8QYX|1|A2|G|4405
8QYX|1|A2|U|4406
8QYX|1|A2|G|4407
*
8QYX|1|A2|U|4435
8QYX|1|A2|U|4436
8QYX|1|A2|U|4437
8QYX|1|A2|U|4438
8QYX|1|A2|U|4439

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

Ribosomal protein uL16-like

Chain E2

Large ribosomal subunit protein uL3