IL_8QYX_132

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_132 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1186

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8QYX|1|A2|C|4412
8QYX|1|A2|C|4413
8QYX|1|A2|A|4414
8QYX|1|A2|A|4415
8QYX|1|A2|G|4416
*
8QYX|1|A2|C|4426
8QYX|1|A2|G|4427
8QYX|1|A2|A|4428
8QYX|1|A2|C|4429
8QYX|1|A2|G|4430

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

Ribosomal protein uL16-like

Chain g1

Large ribosomal subunit protein eL40