IL_8QYX_138
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- UUG*CCAAG
- Length
- 8 nucleotides
- Bulged bases
- 8QYX|1|A2|A|4488
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_138 not in the Motif Atlas
- Geometric match to IL_3DD2_004
- Geometric discrepancy: 0.3926
- The information below is about IL_3DD2_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55516.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
8QYX|1|A2|U|4468
8QYX|1|A2|U|4469
8QYX|1|A2|G|4470
*
8QYX|1|A2|C|4485
8QYX|1|A2|C|4486
8QYX|1|A2|A|4487
8QYX|1|A2|A|4488
8QYX|1|A2|G|4489
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C1
- 60S ribosomal protein L9
- Chain E2
- Large ribosomal subunit protein uL3
- Chain I1
- 60S ribosomal protein L13a
- Chain g1
- Large ribosomal subunit protein eL40
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