IL_8QYX_142

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8QYX|1|A2|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_142 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.3616

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8QYX|1|A2|C|4582
8QYX|1|A2|C|4583
8QYX|1|A2|A|4584
8QYX|1|A2|U|4585
*
8QYX|1|A2|A|4717
8QYX|1|A2|G|4718
8QYX|1|A2|G|4719
8QYX|1|A2|C|4720
8QYX|1|A2|G|4721

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain I1

60S ribosomal protein L13a