IL_8QYX_142
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CCAU*AGGCG
- Length
- 9 nucleotides
- Bulged bases
- 8QYX|1|A2|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_142 not in the Motif Atlas
- Geometric match to IL_8T29_001
- Geometric discrepancy: 0.3616
- The information below is about IL_8T29_001
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
8QYX|1|A2|C|4582
8QYX|1|A2|C|4583
8QYX|1|A2|A|4584
8QYX|1|A2|U|4585
*
8QYX|1|A2|A|4717
8QYX|1|A2|G|4718
8QYX|1|A2|G|4719
8QYX|1|A2|C|4720
8QYX|1|A2|G|4721
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain E2
- Large ribosomal subunit protein uL3
- Chain I1
- 60S ribosomal protein L13a
Coloring options: