3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CCAU*AGGCG
Length
9 nucleotides
Bulged bases
8QYX|1|A2|C|4720
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_142 not in the Motif Atlas
Geometric match to IL_8T29_001
Geometric discrepancy: 0.3616
The information below is about IL_8T29_001
Detailed Annotation
Double sheared; A in syn
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

8QYX|1|A2|C|4582
8QYX|1|A2|C|4583
8QYX|1|A2|A|4584
8QYX|1|A2|U|4585
*
8QYX|1|A2|A|4717
8QYX|1|A2|G|4718
8QYX|1|A2|G|4719
8QYX|1|A2|C|4720
8QYX|1|A2|G|4721

Current chains

Chain A2
28S rRNA

Nearby chains

Chain E2
Large ribosomal subunit protein uL3
Chain I1
60S ribosomal protein L13a

Coloring options:


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