IL_8QYX_153

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8QYX|1|A2|C|4757, 8QYX|1|A2|U|4758, 8QYX|1|A2|A|4764, 8QYX|1|A2|G|4870, 8QYX|1|A2|C|4871, 8QYX|1|A2|G|4873, 8QYX|1|A2|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|4756
8QYX|1|A2|C|4757
8QYX|1|A2|U|4758
8QYX|1|A2|C|4759
8QYX|1|A2|G|4760
8QYX|1|A2|G|4761
8QYX|1|A2|A|4762
8QYX|1|A2|U|4763
8QYX|1|A2|A|4764
8QYX|1|A2|G|4765
*
8QYX|1|A2|U|4869
8QYX|1|A2|G|4870
8QYX|1|A2|C|4871
8QYX|1|A2|G|4872
8QYX|1|A2|G|4873
8QYX|1|A2|A|4874
8QYX|1|A2|G|4875
8QYX|1|A2|U|4876
8QYX|1|A2|G|4877

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I1

60S ribosomal protein L13a

Chain M1

60S ribosomal protein L18a