IL_8QYX_155

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_155 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3064

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8QYX|1|A2|U|4885
8QYX|1|A2|C|4886
8QYX|1|A2|C|4887
8QYX|1|A2|U|4888
8QYX|1|A2|G|4889
*
8QYX|1|A2|C|4930
8QYX|1|A2|G|4931
8QYX|1|A2|U|4932
8QYX|1|A2|C|4933
8QYX|1|A2|A|4934

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I1

60S ribosomal protein L13a