IL_8R3V_046

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_046 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8R3V|1|72|A|1262
8R3V|1|72|U|1263
8R3V|1|72|A|1264
8R3V|1|72|A|1265
8R3V|1|72|G|1266
8R3V|1|72|U|1267
8R3V|1|72|A|1268
8R3V|1|72|A|1269
*
8R3V|1|72|U|2011
8R3V|1|72|G|2012
8R3V|1|72|A|2013
8R3V|1|72|A|2014
8R3V|1|72|A|2015
8R3V|1|72|U|2016
8R3V|1|72|U|2017

Current chains

Chain 72

23S ribosomal RNA

Nearby chains