IL_8R3V_065

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8R3V|1|72|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_065 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0603

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8R3V|1|72|C|1686
8R3V|1|72|G|1687
8R3V|1|72|U|1688
8R3V|1|72|A|1689
8R3V|1|72|A|1690
8R3V|1|72|C|1691
*
8R3V|1|72|G|1696
8R3V|1|72|G|1697
8R3V|1|72|A|1698
8R3V|1|72|G|1699
8R3V|1|72|A|1700
8R3V|1|72|A|1701
8R3V|1|72|G|1702

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain b2

50S ribosomal protein L2