IL_8R3V_094

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_094 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1736

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8R3V|1|72|A|2459
8R3V|1|72|U|2460
8R3V|1|72|A|2461
*
8R3V|1|72|U|2489
8R3V|1|72|G|2490
8R3V|1|72|U|2491
8R3V|1|72|U|2492
8R3V|1|72|U|2493

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain Y2

Transfer RNA; tRNA

Chain h2

50S ribosomal protein L16