IL_8R3V_095

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_095 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1558

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8R3V|1|72|C|2466
8R3V|1|72|C|2467
8R3V|1|72|A|2468
8R3V|1|72|A|2469
8R3V|1|72|G|2470
*
8R3V|1|72|C|2480
8R3V|1|72|G|2481
8R3V|1|72|A|2482
8R3V|1|72|C|2483
8R3V|1|72|G|2484

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain Y2

Transfer RNA; tRNA

Chain h2

50S ribosomal protein L16