IL_8R3V_136

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_136 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1744

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8R3V|1|A1|G|416
8R3V|1|A1|G|417
8R3V|1|A1|C|418
*
8R3V|1|A1|G|425
8R3V|1|A1|U|426
8R3V|1|A1|U|427

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Small ribosomal subunit protein uS4