IL_8R3V_138

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8R3V|1|A1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_138 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8R3V|1|A1|G|446
8R3V|1|A1|G|447
8R3V|1|A1|A|448
8R3V|1|A1|G|449
8R3V|1|A1|G|450
*
8R3V|1|A1|C|483
8R3V|1|A1|G|484
8R3V|1|A1|U|485
8R3V|1|A1|U|486
8R3V|1|A1|A|487
8R3V|1|A1|C|488

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain D1

Small ribosomal subunit protein uS4

Chain P1

30S ribosomal protein S16

Chain i2

50S ribosomal protein L9