IL_8R3V_142

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8R3V|1|A1|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_142 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.143

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8R3V|1|A1|C|569
8R3V|1|A1|G|570
8R3V|1|A1|U|571
8R3V|1|A1|A|572
8R3V|1|A1|A|573
8R3V|1|A1|A|574
8R3V|1|A1|G|575
*
8R3V|1|A1|C|880
8R3V|1|A1|G|881

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain H1

Small ribosomal subunit protein uS8

Chain L1

Small ribosomal subunit protein uS12

Chain Q1

Small ribosomal subunit protein uS17