IL_8R3V_225

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_225 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0648

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8R3V|1|A2|C|779
8R3V|1|A2|A|780
8R3V|1|A2|A|781
8R3V|1|A2|A|782
8R3V|1|A2|C|783
*
8R3V|1|A2|G|799
8R3V|1|A2|G|800
8R3V|1|A2|U|801
8R3V|1|A2|A|802
8R3V|1|A2|G|803

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain K2

Small ribosomal subunit protein uS11

Chain U2

30S ribosomal protein S21