IL_8R3V_245

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_245 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.179

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8R3V|1|A2|C|1259
8R3V|1|A2|G|1260
8R3V|1|A2|A|1261
8R3V|1|A2|C|1262
8R3V|1|A2|C|1263
*
8R3V|1|A2|G|1272
8R3V|1|A2|C|1273
8R3V|1|A2|A|1274
8R3V|1|A2|A|1275
8R3V|1|A2|G|1276

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain N2

Small ribosomal subunit protein uS14

Chain S2

Small ribosomal subunit protein uS19