IL_8R3V_276

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_276 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.248

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8R3V|1|A1|G|1416
8R3V|1|A1|G|1417
8R3V|1|A1|A|1418
8R3V|1|A1|G|1419
*
8R3V|1|A1|U|1481
8R3V|1|A1|G|1482
8R3V|1|A1|A|1483
8R3V|1|A1|C|1484

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain L1

Small ribosomal subunit protein uS12