IL_8R55_074

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

8R55|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_074 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.2

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

8R55|1|X|G|81
8R55|1|X|G|82
8R55|1|X|G|83
8R55|1|X|A|84
8R55|1|X|G|85
*
8R55|1|X|C|97
8R55|1|X|U|98
8R55|1|X|U|99
8R55|1|X|U|100
8R55|1|X|G|101
8R55|1|X|A|102
8R55|1|X|U|103
8R55|1|X|C|104

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain t

Large ribosomal subunit protein uL24

Chain w

Large ribosomal subunit protein uL29