IL_8R55_078

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_078 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.117

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8R55|1|X|C|241
8R55|1|X|U|242
8R55|1|X|G|243
8R55|1|X|A|244
8R55|1|X|G|245
8R55|1|X|U|246
8R55|1|X|A|247
8R55|1|X|G|248
*
8R55|1|X|C|256
8R55|1|X|G|257
8R55|1|X|A|258
8R55|1|X|A|259
8R55|1|X|A|260
8R55|1|X|C|261
8R55|1|X|G|262

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain i

50S ribosomal protein L15