IL_8R55_100

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_100 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1448

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

8R55|1|X|G|911
8R55|1|X|C|912
8R55|1|X|A|913
8R55|1|X|C|914
8R55|1|X|U|915
*
8R55|1|X|A|956
8R55|1|X|A|957
8R55|1|X|A|958
8R55|1|X|C|959

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain Y

5S ribosomal RNA; 5S rRNA

Chain j

Large ribosomal subunit protein uL16