IL_8R55_102

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

ACUAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_102 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2268

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8R55|1|X|A|922
8R55|1|X|C|923
8R55|1|X|U|924
8R55|1|X|A|925
8R55|1|X|G|926
*
8R55|1|X|C|945
8R55|1|X|G|946
8R55|1|X|A|947
8R55|1|X|A|948
8R55|1|X|U|949

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL16