IL_8R55_110

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8R55|1|X|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_110 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1147

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8R55|1|X|U|1064
8R55|1|X|U|1065
8R55|1|X|A|1066
8R55|1|X|A|1067
8R55|1|X|G|1068
8R55|1|X|U|1069
8R55|1|X|G|1070
*
8R55|1|X|C|1186
8R55|1|X|U|1187
8R55|1|X|A|1188
8R55|1|X|A|1189
8R55|1|X|A|1190

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6

Chain e

Large ribosomal subunit protein uL13