IL_8R55_119

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_119 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1334

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8R55|1|X|A|1302
8R55|1|X|U|1303
8R55|1|X|G|1304
8R55|1|X|A|1305
8R55|1|X|G|1306
8R55|1|X|U|1307
8R55|1|X|A|1308
8R55|1|X|G|1309
*
8R55|1|X|U|2040
8R55|1|X|G|2041
8R55|1|X|A|2042
8R55|1|X|A|2043
8R55|1|X|A|2044
8R55|1|X|U|2045
8R55|1|X|U|2046

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain b

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22