IL_8R55_122

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_122 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1067

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|C|1390
8R55|1|X|U|1391
8R55|1|X|A|1392
8R55|1|X|A|1393
8R55|1|X|G|1394
*
8R55|1|X|C|1415
8R55|1|X|G|1416
8R55|1|X|A|1417
8R55|1|X|U|1418
8R55|1|X|G|1419

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Z

Large ribosomal subunit protein uL2