IL_8R55_123

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_123 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1489

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8R55|1|X|C|1396
8R55|1|X|G|1397
8R55|1|X|A|1398
8R55|1|X|G|1399
8R55|1|X|G|1400
*
8R55|1|X|C|1409
8R55|1|X|G|1410
8R55|1|X|U|1411
8R55|1|X|A|1412
8R55|1|X|G|1413

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Z

Large ribosomal subunit protein uL2

Chain v

Large ribosomal subunit protein bL28