IL_8R55_141

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

8R55|1|X|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_141 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3832

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8R55|1|X|U|1756
8R55|1|X|G|1757
8R55|1|X|U|1758
8R55|1|X|U|1759
8R55|1|X|A|1760
8R55|1|X|G|1761
*
8R55|1|X|C|1772
8R55|1|X|G|1773
8R55|1|X|A|1774
8R55|1|X|G|1775
8R55|1|X|A|1776

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA