IL_8R55_166

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_166 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1076

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8R55|1|X|A|2488
8R55|1|X|U|2489
8R55|1|X|C|2490
*
8R55|1|X|G|2518
8R55|1|X|G|2519
8R55|1|X|U|2520
8R55|1|X|U|2521
8R55|1|X|U|2522

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL27