IL_8R55_167

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_167 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8R55|1|X|C|2495
8R55|1|X|C|2496
8R55|1|X|A|2497
8R55|1|X|A|2498
8R55|1|X|G|2499
*
8R55|1|X|C|2509
8R55|1|X|G|2510
8R55|1|X|A|2511
8R55|1|X|C|2512
8R55|1|X|G|2513

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 7

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL16