IL_8R55_178

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

8R55|1|X|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_178 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1385

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8R55|1|X|G|2766
8R55|1|X|A|2767
8R55|1|X|U|2768
8R55|1|X|A|2769
8R55|1|X|A|2770
8R55|1|X|G|2771
*
8R55|1|X|U|2791
8R55|1|X|G|2792
8R55|1|X|A|2793
8R55|1|X|A|2794
8R55|1|X|G|2795
8R55|1|X|C|2796

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6

Chain e

Large ribosomal subunit protein uL13